arcs
Scaffolding genome sequence assemblies using 10X Genomics data
Usage
BioConda Installation
With an activated BioConda channel (see Set up bioconda channels), install with:
conda install arcs
More information about BioConda can be found here
Install specific version
From the Packages and Containers tab you can select a conda package version to install:
conda install -c conda-forge -c bioconda arcs==1.2.8--hdcf5f25_0
Update to latest version
You can update your package to the latest version using the following command:
conda update arcs
Docker Installation
You first need to be sure that docker is installed in your system, then you can install the containers using the following command:
docker pull quay.io/biocontainers/arcs:1.2.8--hdcf5f25_0
For docker containers no latest version is available, you always need to use the container tag.
Singularity Installation
You first need to be sure that singularity is installed in your system, then you can use the containers using the following command:
singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.8--hdcf5f25_0
For docker containers no latest version is available, you always need to use the container tag.
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Homepage
GitHub Repo
Last Update
2024-11-07
Type | Version | Last Update | Size | Full Tag | Security |
---|
1.1.0 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.1.0--he1c1bb9_0 | |||
1.1.0 | 2024-07-10 | 15.91M | docker pull quay.io/biocontainers/arcs:1.1.0--he1c1bb9_0 | ||
1.1.0 | 2019-10-27 | 15.72M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.1.0--he1c1bb9_0 | ||
1.1.1 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.1.1--h176a8bc_0 | |||
1.1.1 | 2024-07-10 | 16.49M | docker pull quay.io/biocontainers/arcs:1.1.1--h176a8bc_0 | ||
1.1.1 | 2020-01-11 | 15.73M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.1.1--h176a8bc_0 | ||
1.2.0 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.0--h176a8bc_0 | |||
1.2.0 | 2021-01-22 | 16.61M | docker pull quay.io/biocontainers/arcs:1.2.0--h176a8bc_0 | ||
1.2.0 | 2021-01-22 | 15.73M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.0--h176a8bc_0 | ||
1.2.1 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.1--h176a8bc_0 | |||
1.2.1 | 2021-01-31 | 16.61M | docker pull quay.io/biocontainers/arcs:1.2.1--h176a8bc_0 | ||
1.2.1 | 2021-01-31 | 15.73M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.1--h176a8bc_0 | ||
1.2.1 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.1--h176a8bc_1 | |||
1.2.1 | 2021-02-06 | 17.34M | docker pull quay.io/biocontainers/arcs:1.2.1--h176a8bc_1 | ||
1.2.1 | 2021-02-06 | 16.43M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.1--h176a8bc_1 | ||
1.2.1 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.1--hc90279e_2 | |||
1.2.1 | 2021-03-26 | 18.79M | docker pull quay.io/biocontainers/arcs:1.2.1--hc90279e_2 | ||
1.2.1 | 2021-03-26 | 17.95M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.1--hc90279e_2 | ||
1.2.2 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.2--hc90279e_0 | |||
1.2.2 | 2021-06-02 | 19.46M | docker pull quay.io/biocontainers/arcs:1.2.2--hc90279e_0 | ||
1.2.2 | 2021-06-02 | 18.07M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.2--hc90279e_0 | ||
1.2.3 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.3--hc90279e_0 | |||
1.2.3 | 2022-02-12 | 12.00M | docker pull quay.io/biocontainers/arcs:1.2.3--hc90279e_0 | ||
1.2.3 | 2022-02-12 | 11.22M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.3--hc90279e_0 | ||
1.2.3 | 2022-03-09 | 11.22M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.3--h7ff8a90_1 | ||
1.2.3 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.3--h7ff8a90_1 | |||
1.2.3 | 2022-02-22 | 11.99M | docker pull quay.io/biocontainers/arcs:1.2.3--h7ff8a90_1 | ||
1.2.5 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.5--h7ff8a90_0 | |||
1.2.5 | 2023-01-07 | 12.40M | docker pull quay.io/biocontainers/arcs:1.2.5--h7ff8a90_0 | ||
1.2.5 | 2023-01-07 | 11.42M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.5--h7ff8a90_0 | ||
1.2.5 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.5--h21ec9f0_1 | |||
1.2.5 | 2023-05-28 | 12.20M | docker pull quay.io/biocontainers/arcs:1.2.5--h21ec9f0_1 | ||
1.2.5 | 2023-05-28 | 11.42M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.5--h21ec9f0_1 | ||
1.2.4 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.4--h7ff8a90_1 | |||
1.2.4 | 2022-08-01 | 12.19M | docker pull quay.io/biocontainers/arcs:1.2.4--h7ff8a90_1 | ||
1.2.4 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.4--h7ff8a90_0 | |||
1.2.4 | 2022-06-08 | 12.19M | docker pull quay.io/biocontainers/arcs:1.2.4--h7ff8a90_0 | ||
1.2.4 | 2022-06-08 | 11.41M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.4--h7ff8a90_0 | ||
1.2.4 | 2022-08-02 | 11.41M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.4--h7ff8a90_1 | ||
1.2.6 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.6--h21ec9f0_0 | |||
1.2.6 | 2023-12-07 | 11.95M | docker pull quay.io/biocontainers/arcs:1.2.6--h21ec9f0_0 | ||
1.2.6 | 2023-12-07 | 11.46M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.6--h21ec9f0_0 | ||
1.2.7 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.7--h21ec9f0_0 | |||
1.2.7 | 2024-03-27 | 86.07M | docker pull quay.io/biocontainers/arcs:1.2.7--h21ec9f0_0 | ||
1.2.7 | 2024-03-26 | 80.74M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.7--h21ec9f0_0 | ||
1.2.7 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.7--hdcf5f25_1 | |||
1.2.7 | 2024-06-09 | 96.94M | docker pull quay.io/biocontainers/arcs:1.2.7--hdcf5f25_1 | ||
1.2.7 | 2024-06-09 | 93.68M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.7--hdcf5f25_1 | ||
1.2.7 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.7--hdcf5f25_2 | |||
1.2.7 | 2024-07-24 | 101.90M | docker pull quay.io/biocontainers/arcs:1.2.7--hdcf5f25_2 | ||
1.2.7 | 2024-07-25 | 95.69M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.7--hdcf5f25_2 | ||
1.2.8 | 0.00M | conda install -c conda-forge -c bioconda arcs==1.2.8--hdcf5f25_0 | |||
1.2.8 | 2024-11-06 | 100.08M | docker pull quay.io/biocontainers/arcs:1.2.8--hdcf5f25_0 | ||
1.2.8 | 2024-11-07 | 93.77M | singularity run https://depot.galaxyproject.org/singularity/arcs:1.2.8--hdcf5f25_0 |