basic
Basic is a semi-de novo assembly method for assembling bcr and tcr genes from single cell rna-seq data.
Usage
BioConda Installation
With an activated BioConda channel (see Set up bioconda channels), install with:
conda install basic
More information about BioConda can be found here
Install specific version
From the Packages and Containers tab you can select a conda package version to install:
conda install -c conda-forge -c bioconda basic==1.5.1--pyh864c0ab_1
Update to latest version
You can update your package to the latest version using the following command:
conda update basic
Docker Installation
You first need to be sure that docker is installed in your system, then you can install the containers using the following command:
docker pull quay.io/biocontainers/basic:1.5.1--pyh864c0ab_1
For docker containers no latest version is available, you always need to use the container tag.
Singularity Installation
You first need to be sure that singularity is installed in your system, then you can use the containers using the following command:
singularity run https://depot.galaxyproject.org/singularity/basic:1.5.1--pyh864c0ab_1
For docker containers no latest version is available, you always need to use the container tag.
Keyword
Downloads
307.4K
Versions
1.5.1, 1.5.0, 1.4.1, 1.4.0, 1.3.1, 1.0.1
License
GitHub Repo
Last Update
2024-06-27
Type | Version | Last Update | Size | Full Tag | Security |
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1.0.1 | 2024-06-27 | 74.22M | docker pull quay.io/biocontainers/basic:1.0.1--py35_0 | ||
1.0.1 | 2024-06-27 | 74.69M | docker pull quay.io/biocontainers/basic:1.0.1--py36_0 | ||
1.0.1 | 0.00M | conda install -c conda-forge -c bioconda basic==1.0.1--py35_0 | |||
1.0.1 | 0.00M | conda install -c conda-forge -c bioconda basic==1.0.1--py36_0 | |||
1.0.1 | 2019-08-01 | 72.72M | singularity run https://depot.galaxyproject.org/singularity/basic:1.0.1--py35_0 | ||
1.0.1 | 2019-08-01 | 73.13M | singularity run https://depot.galaxyproject.org/singularity/basic:1.0.1--py36_0 | ||
1.3.1 | 2024-06-27 | 82.45M | docker pull quay.io/biocontainers/basic:1.3.1--py35_0 | ||
1.3.1 | 2024-06-27 | 83.27M | docker pull quay.io/biocontainers/basic:1.3.1--py36_0 | ||
1.3.1 | 0.00M | conda install -c conda-forge -c bioconda basic==1.3.1--py35_0 | |||
1.3.1 | 0.00M | conda install -c conda-forge -c bioconda basic==1.3.1--py36_0 | |||
1.3.1 | 2019-08-01 | 80.72M | singularity run https://depot.galaxyproject.org/singularity/basic:1.3.1--py35_0 | ||
1.3.1 | 2019-08-01 | 81.48M | singularity run https://depot.galaxyproject.org/singularity/basic:1.3.1--py36_0 | ||
1.4.1 | 2024-06-27 | 84.49M | docker pull quay.io/biocontainers/basic:1.4.1--py_0 | ||
1.4.1 | 0.00M | conda install -c conda-forge -c bioconda basic==1.4.1--py_0 | |||
1.4.1 | 2019-08-01 | 82.60M | singularity run https://depot.galaxyproject.org/singularity/basic:1.4.1--py_0 | ||
1.4.0 | 2024-06-27 | 84.11M | docker pull quay.io/biocontainers/basic:1.4.0--py_0 | ||
1.4.0 | 2024-06-27 | 84.11M | docker pull quay.io/biocontainers/basic:1.4.0--py_1 | ||
1.4.0 | 0.00M | conda install -c conda-forge -c bioconda basic==1.4.0--py_0 | |||
1.4.0 | 0.00M | conda install -c conda-forge -c bioconda basic==1.4.0--py_1 | |||
1.4.0 | 2019-08-27 | 82.28M | singularity run https://depot.galaxyproject.org/singularity/basic:1.4.0--py_0 | ||
1.4.0 | 2019-08-01 | 82.28M | singularity run https://depot.galaxyproject.org/singularity/basic:1.4.0--py_1 | ||
1.5.0 | 0.00M | conda install -c conda-forge -c bioconda basic==1.5.0--py_0 | |||
1.5.0 | 2024-06-27 | 102.52M | docker pull quay.io/biocontainers/basic:1.5.0--py_0 | ||
1.5.0 | 2019-08-01 | 100.38M | singularity run https://depot.galaxyproject.org/singularity/basic:1.5.0--py_0 | ||
1.5.1 | 0.00M | conda install -c conda-forge -c bioconda basic==1.5.1--py_0 | |||
1.5.1 | 2024-06-27 | 107.77M | docker pull quay.io/biocontainers/basic:1.5.1--py_0 | ||
1.5.1 | 2019-08-01 | 100.38M | singularity run https://depot.galaxyproject.org/singularity/basic:1.5.1--py_0 | ||
1.5.1 | 0.00M | conda install -c conda-forge -c bioconda basic==1.5.1--pyh864c0ab_1 | |||
1.5.1 | 2020-07-26 | 136.57M | docker pull quay.io/biocontainers/basic:1.5.1--pyh864c0ab_1 | ||
1.5.1 | 2020-07-26 | 134.46M | singularity run https://depot.galaxyproject.org/singularity/basic:1.5.1--pyh864c0ab_1 |