cliquesnv
Scalable reconstruction of intra-host viral populations from ngs reads

Usage

BioConda Installation
With an activated BioConda channel (see Set up bioconda channels), install with:
conda install cliquesnv
More information about BioConda can be found here
Install specific version
From the Packages and Containers tab you can select a conda package version to install:
conda install -c conda-forge -c bioconda cliquesnv==2.0.3--hdfd78af_0
Update to latest version
You can update your package to the latest version using the following command:
conda update cliquesnv
Docker Installation
You first need to be sure that docker is installed in your system, then you can install the containers using the following command:
docker pull quay.io/biocontainers/cliquesnv:2.0.3--hdfd78af_0
For docker containers no latest version is available, you always need to use the container tag.
Singularity Installation
You first need to be sure that singularity is installed in your system, then you can use the containers using the following command:
singularity run https://depot.galaxyproject.org/singularity/cliquesnv:2.0.3--hdfd78af_0
For docker containers no latest version is available, you always need to use the container tag.
Keyword
Downloads
30.8K
Versions

2.0.3, 2.0.2, 2.0.0, 1.5.7, 1.5.6, 1.5.5

License
GitHub Repo
Last Update
2021-12-03
Type
Version
Last Update
Size
Full Tag
Security
1.5.6
0.00M
conda install -c conda-forge -c bioconda cliquesnv==1.5.6--0
1.5.6
2020-12-15
278.19M
docker pull quay.io/biocontainers/cliquesnv:1.5.6--0
1.5.6
2020-12-15
267.23M
singularity run https://depot.galaxyproject.org/singularity/cliquesnv:1.5.6--0
1.5.5
0.00M
conda install -c conda-forge -c bioconda cliquesnv==1.5.5--0
1.5.5
2020-10-20
298.69M
docker pull quay.io/biocontainers/cliquesnv:1.5.5--0
1.5.5
2020-10-21
285.66M
singularity run https://depot.galaxyproject.org/singularity/cliquesnv:1.5.5--0
1.5.7
0.00M
conda install -c conda-forge -c bioconda cliquesnv==1.5.7--0
1.5.7
2021-01-20
268.10M
docker pull quay.io/biocontainers/cliquesnv:1.5.7--0
1.5.7
2021-01-20
267.19M
singularity run https://depot.galaxyproject.org/singularity/cliquesnv:1.5.7--0
1.5.7
0.00M
conda install -c conda-forge -c bioconda cliquesnv==1.5.7--hdfd78af_1
1.5.7
2021-03-26
293.96M
docker pull quay.io/biocontainers/cliquesnv:1.5.7--hdfd78af_1
1.5.7
2021-03-27
291.38M
singularity run https://depot.galaxyproject.org/singularity/cliquesnv:1.5.7--hdfd78af_1
2.0.0
0.00M
conda install -c conda-forge -c bioconda cliquesnv==2.0.0--hdfd78af_0
2.0.0
2021-04-10
305.13M
docker pull quay.io/biocontainers/cliquesnv:2.0.0--hdfd78af_0
2.0.0
2021-04-10
291.38M
singularity run https://depot.galaxyproject.org/singularity/cliquesnv:2.0.0--hdfd78af_0
2.0.2
0.00M
conda install -c conda-forge -c bioconda cliquesnv==2.0.2--hdfd78af_0
2.0.2
2021-05-03
304.43M
docker pull quay.io/biocontainers/cliquesnv:2.0.2--hdfd78af_0
2.0.2
2021-05-04
290.66M
singularity run https://depot.galaxyproject.org/singularity/cliquesnv:2.0.2--hdfd78af_0
2.0.3
0.00M
conda install -c conda-forge -c bioconda cliquesnv==2.0.3--hdfd78af_0
2.0.3
2021-12-03
304.72M
docker pull quay.io/biocontainers/cliquesnv:2.0.3--hdfd78af_0
2.0.3
2021-12-03
290.88M
singularity run https://depot.galaxyproject.org/singularity/cliquesnv:2.0.3--hdfd78af_0