scalpel
Sensitive detection of indels (insertions and deletions)

Usage

BioConda Installation
With an activated BioConda channel (see Set up bioconda channels), install with:
conda install scalpel
More information about BioConda can be found here
Install specific version
From the Packages and Containers tab you can select a conda package version to install:
conda install -c conda-forge -c bioconda scalpel==0.5.4--hb891895_8
Update to latest version
You can update your package to the latest version using the following command:
conda update scalpel
Docker Installation
You first need to be sure that docker is installed in your system, then you can install the containers using the following command:
docker pull quay.io/biocontainers/scalpel:0.5.4--hb891895_8
For docker containers no latest version is available, you always need to use the container tag.
Singularity Installation
You first need to be sure that singularity is installed in your system, then you can use the containers using the following command:
singularity run https://depot.galaxyproject.org/singularity/scalpel:0.5.4--hb891895_8
For docker containers no latest version is available, you always need to use the container tag.
Keyword
Downloads
211.7K
Versions

0.5.4, 0.5.3

License
GitHub Repo
Last Update
2024-12-18
Type
Version
Last Update
Size
Full Tag
Security
0.5.3
2024-06-24
56.52M
docker pull quay.io/biocontainers/scalpel:0.5.3--bamtools2.4.1_1
0.5.3
2024-06-24
40.50M
docker pull quay.io/biocontainers/scalpel:0.5.3--pl5.22.0_0
0.5.3
2024-06-24
56.78M
docker pull quay.io/biocontainers/scalpel:0.5.3--h2407274_2
0.5.3
0.00M
conda install -c conda-forge -c bioconda scalpel==0.5.3--bamtools2.4.1_1
0.5.3
0.00M
conda install -c conda-forge -c bioconda scalpel==0.5.3--pl5.22.0_0
0.5.3
0.00M
conda install -c conda-forge -c bioconda scalpel==0.5.3--h2407274_2
0.5.3
2019-08-24
53.66M
singularity run https://depot.galaxyproject.org/singularity/scalpel:0.5.3--bamtools2.4.1_1
0.5.3
2019-08-24
53.93M
singularity run https://depot.galaxyproject.org/singularity/scalpel:0.5.3--h2407274_2
0.5.3
2019-08-24
38.14M
singularity run https://depot.galaxyproject.org/singularity/scalpel:0.5.3--pl5.22.0_0
0.5.4
2024-06-24
56.30M
docker pull quay.io/biocontainers/scalpel:0.5.4--h2407274_0
0.5.4
0.00M
conda install -c conda-forge -c bioconda scalpel==0.5.4--h2407274_0
0.5.4
0.00M
conda install -c conda-forge -c bioconda scalpel==0.5.4--hdbb99b9_1
0.5.4
2024-06-24
60.50M
docker pull quay.io/biocontainers/scalpel:0.5.4--hdbb99b9_1
0.5.4
0.00M
conda install -c conda-forge -c bioconda scalpel==0.5.4--h7376a40_2
0.5.4
2024-06-24
79.31M
docker pull quay.io/biocontainers/scalpel:0.5.4--h7376a40_2
0.5.4
2019-08-24
53.33M
singularity run https://depot.galaxyproject.org/singularity/scalpel:0.5.4--h2407274_0
0.5.4
2020-01-22
72.02M
singularity run https://depot.galaxyproject.org/singularity/scalpel:0.5.4--h7376a40_2
0.5.4
2019-08-24
57.38M
singularity run https://depot.galaxyproject.org/singularity/scalpel:0.5.4--hdbb99b9_1
0.5.4
0.00M
conda install -c conda-forge -c bioconda scalpel==0.5.4--h6fbe174_3
0.5.4
2021-03-27
82.65M
docker pull quay.io/biocontainers/scalpel:0.5.4--h6fbe174_3
0.5.4
2021-03-28
78.51M
singularity run https://depot.galaxyproject.org/singularity/scalpel:0.5.4--h6fbe174_3
0.5.4
2022-03-11
70.91M
singularity run https://depot.galaxyproject.org/singularity/scalpel:0.5.4--h9a52abd_4
0.5.4
0.00M
conda install -c conda-forge -c bioconda scalpel==0.5.4--h9a52abd_4
0.5.4
2022-02-23
73.74M
docker pull quay.io/biocontainers/scalpel:0.5.4--h9a52abd_4
0.5.4
0.00M
conda install -c conda-forge -c bioconda scalpel==0.5.4--h2df6261_5
0.5.4
2024-06-24
72.51M
docker pull quay.io/biocontainers/scalpel:0.5.4--h2df6261_5
0.5.4
2023-05-16
69.75M
singularity run https://depot.galaxyproject.org/singularity/scalpel:0.5.4--h2df6261_5
0.5.4
0.00M
conda install -c conda-forge -c bioconda scalpel==0.5.4--h674ebbe_7
0.5.4
2024-06-06
73.15M
docker pull quay.io/biocontainers/scalpel:0.5.4--h674ebbe_7
0.5.4
0.00M
conda install -c conda-forge -c bioconda scalpel==0.5.4--h2df6261_6
0.5.4
2024-05-23
75.53M
docker pull quay.io/biocontainers/scalpel:0.5.4--h2df6261_6
0.5.4
2024-05-23
70.77M
singularity run https://depot.galaxyproject.org/singularity/scalpel:0.5.4--h2df6261_6
0.5.4
2024-06-07
70.77M
singularity run https://depot.galaxyproject.org/singularity/scalpel:0.5.4--h674ebbe_7
0.5.4
0.00M
conda install -c conda-forge -c bioconda scalpel==0.5.4--hb891895_8
0.5.4
2024-12-14
73.58M
docker pull quay.io/biocontainers/scalpel:0.5.4--hb891895_8
0.5.4
2024-12-18
71.11M
singularity run https://depot.galaxyproject.org/singularity/scalpel:0.5.4--hb891895_8