sctagger
Fast and accurate matching of cellular barcodes across short- and long-reads of single-cell rna-seq experiments

Usage

BioConda Installation
With an activated BioConda channel (see Set up bioconda channels), install with:
conda install sctagger
More information about BioConda can be found here
Install specific version
From the Packages and Containers tab you can select a conda package version to install:
conda install -c conda-forge -c bioconda sctagger==1.1.1--hdfd78af_0
Update to latest version
You can update your package to the latest version using the following command:
conda update sctagger
Docker Installation
You first need to be sure that docker is installed in your system, then you can install the containers using the following command:
docker pull quay.io/biocontainers/sctagger:1.1.1--hdfd78af_0
For docker containers no latest version is available, you always need to use the container tag.
Singularity Installation
You first need to be sure that singularity is installed in your system, then you can use the containers using the following command:
singularity run https://depot.galaxyproject.org/singularity/sctagger:1.1.1--hdfd78af_0
For docker containers no latest version is available, you always need to use the container tag.
Keyword
Downloads
1.0K
Versions

1.1.1, 1.1, 1.0.1

License
GitHub Repo
Last Update
2023-06-08
Type
Version
Last Update
Size
Full Tag
Security
1.1
0.00M
conda install -c conda-forge -c bioconda sctagger==1.1--hdfd78af_0
1.1
2023-01-22
127.71M
docker pull quay.io/biocontainers/sctagger:1.1--hdfd78af_0
1.1
2023-02-11
120.32M
singularity run https://depot.galaxyproject.org/singularity/sctagger:1.1--hdfd78af_0
1.0.1
0.00M
conda install -c conda-forge -c bioconda sctagger==1.0.1--hdfd78af_0
1.0.1
2022-11-16
127.46M
docker pull quay.io/biocontainers/sctagger:1.0.1--hdfd78af_0
1.0.1
2023-02-11
119.90M
singularity run https://depot.galaxyproject.org/singularity/sctagger:1.0.1--hdfd78af_0
1.1.1
0.00M
conda install -c conda-forge -c bioconda sctagger==1.1.1--hdfd78af_0
1.1.1
2023-06-08
131.51M
docker pull quay.io/biocontainers/sctagger:1.1.1--hdfd78af_0
1.1.1
2023-06-08
124.54M
singularity run https://depot.galaxyproject.org/singularity/sctagger:1.1.1--hdfd78af_0

392

Accurate consensus sequence from nanopore reads of a gene library