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trimmomatic
A flexible read trimming tool for illumina ngs data

Usage

BioConda Installation
With an activated BioConda channel (see Set up bioconda channels), install with:
conda install trimmomatic
More information about BioConda can be found here
Install specific version
From the Packages and Containers tab you can select a conda package version to install:
conda install -c conda-forge -c bioconda trimmomatic==0.35--hdfd78af_7
Update to latest version
You can update your package to the latest version using the following command:
conda update trimmomatic
Docker Installation
You first need to be sure that docker is installed in your system, then you can install the containers using the following command:
docker pull biocontainers/trimmomatic:v0.38dfsg-1-deb_cv1
For docker containers no latest version is available, you always need to use the container tag.
Singularity Installation
You first need to be sure that singularity is installed in your system, then you can use the containers using the following command:
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.35--hdfd78af_7
For docker containers no latest version is available, you always need to use the container tag.
Keyword
Downloads
1.7M
Homepage
http://www.usadellab.org/cms/?page=trimmomatic
Versions

v0.38dfsg-1-deb, v0.36dfsg-1-deb, 0.39, 0.38, 0.36...

License
GitHub Repo
Last Update
2024-06-22
Identifiers
Type
Version
Last Update
Size
Full Tag
Security
0.33
2024-06-22
157.04M
docker pull quay.io/biocontainers/trimmomatic:0.33--1
0.33
2024-06-22
74.65M
docker pull quay.io/biocontainers/trimmomatic:0.33--0
0.33
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.33--1
0.33
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.33--0
0.33
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.33--2
0.33
2024-06-22
199.03M
docker pull quay.io/biocontainers/trimmomatic:0.33--2
0.33
2019-08-31
75.01M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.33--0
0.33
2019-08-31
113.96M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.33--1
0.33
2019-08-26
199.29M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.33--2
0.33
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.33--hdfd78af_3
0.33
2021-03-27
244.03M
docker pull quay.io/biocontainers/trimmomatic:0.33--hdfd78af_3
0.33
2021-03-28
242.78M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.33--hdfd78af_3
0.36
2024-06-22
74.66M
docker pull quay.io/biocontainers/trimmomatic:0.36--6
0.36
2024-06-22
74.66M
docker pull quay.io/biocontainers/trimmomatic:0.36--4
0.36
2024-06-22
74.66M
docker pull quay.io/biocontainers/trimmomatic:0.36--5
0.36
2024-06-22
52.97M
docker pull quay.io/biocontainers/trimmomatic:0.36--3
0.36
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.36--6
0.36
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.36--4
0.36
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.36--5
0.36
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.36--3
0.36
2019-08-31
53.51M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.36--3
0.36
2019-08-31
75.02M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.36--4
0.36
2019-08-31
75.02M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.36--5
0.36
2019-08-26
75.02M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.36--6
0.38
2024-06-22
74.66M
docker pull quay.io/biocontainers/trimmomatic:0.38--0
0.38
2024-06-22
122.40M
docker pull quay.io/biocontainers/trimmomatic:0.38--1
0.38
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.38--0
0.38
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.38--1
0.38
2019-08-31
75.02M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.38--0
0.38
2019-08-26
121.54M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.38--1
0.32
2024-06-22
74.65M
docker pull quay.io/biocontainers/trimmomatic:0.32--0
0.32
2024-06-22
74.65M
docker pull quay.io/biocontainers/trimmomatic:0.32--1
0.32
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.32--0
0.32
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.32--1
0.32
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.32--2
0.32
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.32--3
0.32
2024-06-22
199.03M
docker pull quay.io/biocontainers/trimmomatic:0.32--2
0.32
2024-06-22
199.52M
docker pull quay.io/biocontainers/trimmomatic:0.32--3
0.32
2019-08-31
75.01M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.32--0
0.32
2019-08-31
75.02M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.32--1
0.32
2019-08-26
199.29M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.32--2
0.32
2019-08-31
199.79M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.32--3
0.32
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.32--hdfd78af_4
0.32
2021-03-27
244.03M
docker pull quay.io/biocontainers/trimmomatic:0.32--hdfd78af_4
0.32
2021-03-28
242.78M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.32--hdfd78af_4
v0.36dfsg-1-deb
2018-06-18
199.61M
docker pull biocontainers/trimmomatic:v0.36dfsg-1-deb_cv1
0.39
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.39--0
0.39
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.39--1
0.39
2024-06-22
255.72M
docker pull quay.io/biocontainers/trimmomatic:0.39--1
0.39
2024-06-22
255.72M
docker pull quay.io/biocontainers/trimmomatic:0.39--0
0.39
2019-08-31
254.84M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.39--0
0.39
2019-08-26
254.84M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.39--1
0.39
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.39--hdfd78af_2
0.39
2021-03-27
287.58M
docker pull quay.io/biocontainers/trimmomatic:0.39--hdfd78af_2
0.39
2021-03-28
284.98M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.39--hdfd78af_2
0.35
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.35--6
0.35
2024-06-22
226.44M
docker pull quay.io/biocontainers/trimmomatic:0.35--6
0.35
2019-10-22
226.13M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.35--6
0.35
0.00M
conda install -c conda-forge -c bioconda trimmomatic==0.35--hdfd78af_7
0.35
2021-03-27
244.04M
docker pull quay.io/biocontainers/trimmomatic:0.35--hdfd78af_7
0.35
2021-03-28
242.79M
singularity run https://depot.galaxyproject.org/singularity/trimmomatic:0.35--hdfd78af_7
v0.38dfsg-1-deb
2019-10-21
181.67M
docker pull biocontainers/trimmomatic:v0.38dfsg-1-deb_cv1